Maya Kodnani was sentenced to 28 years in jail for a leading role in the Naroda Patiya massacre.
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Maya Kodnani wants Mr Shah to establish that she was not at the scene
She is the highest-profile figure to be convicted in the riots case
Maya Kodnani has been out on bail since July 2014
A judge on Wednesday said 14 people including Mr Shah "can be summoned at relevant and appropriate stage of trial".
Ms Kodnani, a gynaecologist, was sentenced to 28 years in jail for a leading role in the Naroda Patiya massacre, one of the worst episodes in the three-day riots. She has been out on bail since July 2014.
Nearly 100 Muslims were killed in Naroda Patiya. The case in which she has asked to call Amit Shah as a defence witness involves Naroda Gam next door, where 11 Muslims were killed.
The former minister claims she was not present when the incident took place on February 28, a day after the Godhra train burning that triggered the riots.
She has told the court that Mr Shah, a legislator, can vouch for her presence at the state assembly at the time of the Naroda killings and later at the Sola Civil Hospital where bodies of the Godhra train victims were brought. She claims she then went to the nursing home she ran in Ahmedabad.
To prove this, she wants to summon - besides Mr Shah - former BJP lawmaker Amrish Patel, then superintendent of civil hospital Anil Chaddha, the staff of her hospital and a man whose child was allegedly born at her hospital that day.
The Naroda Gam massacre was one of the nine major Gujarat riot cases investigated by a Special Investigation Team.
Ms Kodnani was Gujarat's minister for women and child development between 2007 and 2009 and is the highest-profile figure to be convicted in connection with the riots. Witnesses told the court that she handed out swords to rioters, exhorted them to attack Muslims and at one point fired a pistol.
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